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Hi John,
There is a hard limit within Junction on Jar files and Jad files. The Limit is 1,500,000 bytes for jar files (~1.43 MB) and 8192 bytes for Jad files (8k).
A 500k Jar file should be fine, Junction has been used with files close to the hard limit without trouble. If you could tell me the exact error Junction is giving you then I could better understand where the error is generated.
You may like to try uploading something different that is about the same size and see if the problem is related to the Jar file itself.
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